Skip to content

Navigation Menu

Appearance settings

EBISPOT

- AI CODE CREATION
  GitHub CopilotWrite better code with AI
  GitHub Copilot appDirect agents from issue to merge
  MCP Registry^NewIntegrate external tools
- DEVELOPER WORKFLOWS
  ActionsAutomate any workflow
  CodespacesInstant dev environments
  IssuesPlan and track work
  Code ReviewManage code changes
- APPLICATION SECURITY
  GitHub Advanced SecurityFind and fix vulnerabilities
  Code securitySecure your code as you build
  Secret protectionStop leaks before they start
- EXPLORE
  Why GitHub
  Documentation
  Blog
  Changelog
  Marketplace
View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Uh oh!

There was an error while loading. Please reload this page.

Uh oh!

There was an error while loading. Please reload this page.

EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

67 followers
https://www.ebi.ac.uk/spot/

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

efo efo Public

Github repo for the Experimental Factor Ontology (EFO)

Python 64 15
DUO DUO Public

Ontology for consent codes and data use requirements

Makefile 70 17
CMPO CMPO Public

Cellular Microscopy Phenotype Ontology

Python 6 2
ols4 ols4 Public

The EMBL-EBI Ontology Lookup Service (OLS)

Java 96 43

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All CSS Dockerfile HTML Java JavaScript Jinja Jupyter Notebook Makefile Python Ruby Rust Shell TeX TypeScript Web Ontology Language

Sort

Select order

Last updated Name Stars

Showing 10 of 82 repositories

oxo2 Public
A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

EBISPOT/oxo2’s past year of commit activity

Java 1 Apache-2.0 0 0 8 Updated Jul 16, 2026
cohort-ontology Public
A lightweight ontology for consistent identification and description of human cohorts. It defines a unique cohort identifier with minimal metadata, enabling linkage, discovery, and integration of cohort-related data while supporting both named and implicitly defined cohorts.

EBISPOT/cohort-ontology’s past year of commit activity

Makefile 3 CC0-1.0 0 0 0 Updated Jul 16, 2026
ols4 Public
The EMBL-EBI Ontology Lookup Service (OLS)

EBISPOT/ols4’s past year of commit activity

Java 96 Apache-2.0 43 98 (1 issue needs help) 15 Updated Jul 16, 2026
owlmake Public

EBISPOT/owlmake’s past year of commit activity

Rust 1 Apache-2.0 0 0 0 Updated Jul 16, 2026
horned-owl Public Forked from phillord/horned-owl

EBISPOT/horned-owl’s past year of commit activity

Rust 0 LGPL-3.0 18 0 0 Updated Jul 16, 2026
environmental-exposure-ontology Public Forked from EnvironmentOntology/environmental-exposure-ontology
Modular environmental exposures ontology

EBISPOT/environmental-exposure-ontology’s past year of commit activity

Makefile 0 21 0 1 Updated Jul 16, 2026
efo Public
Github repo for the Experimental Factor Ontology (EFO)

EBISPOT/efo’s past year of commit activity

Python 64 15 191 (2 issues need help) 11 Updated Jul 15, 2026
GrEBI Public
HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

EBISPOT/GrEBI’s past year of commit activity

Jupyter Notebook 4 Apache-2.0 4 17 0 Updated Jul 10, 2026
gwas-beyond-snps Public
Supporting new types of genetic variation in the GWAS Catalog

EBISPOT/gwas-beyond-snps’s past year of commit activity

Python 1 Apache-2.0 0 0 0 Updated Jul 9, 2026
gwas-top-hits Public
Tools for submitting top associations to the GWAS Catalog

EBISPOT/gwas-top-hits’s past year of commit activity

Python 0 Apache-2.0 0 5 1 Updated Jul 9, 2026

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.