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@UMEssen

University Medicine Essen

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  1. SALT SALT Public

    Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.

    Python 82 7

  2. FHIR-PYrate FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…

    Python 81 17

  3. Body-and-Organ-Analysis Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …

    Python 75 13

  4. saros-dataset saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    Python 63 8

  5. DICOM-RST DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    Rust 26 3

  6. dicom-deidentifier-ts dicom-deidentifier-ts Public

    TypeScript 12 1

Repositories

Showing 10 of 32 repositories
  • PIGEON Public
    UMEssen/PIGEON’s past year of commit activity
    Python 0 MIT 1 0 3 Updated Jul 16, 2026
  • Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.

    UMEssen/Body-and-Organ-Analysis’s past year of commit activity
    Python 75 Apache-2.0 13 1 1 Updated Jul 9, 2026
  • FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.

    UMEssen/FHIR-PYrate’s past year of commit activity
    Python 81 MIT 17 11 0 Updated Jul 9, 2026
  • DeidentiFHIR-Pipeline Public

    With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.

    UMEssen/DeidentiFHIR-Pipeline’s past year of commit activity
    Java 2 MIT 0 1 5 Updated Jul 6, 2026
  • Volcano-HL7-MLLP-Connector Public

    A high-performance HL7 v2 MLLP listener that converts healthcare messages to JSON and publishes them to Apache Kafka.

    UMEssen/Volcano-HL7-MLLP-Connector’s past year of commit activity
    Scala 0 MIT 1 0 4 Updated Jun 28, 2026
  • dicom-deidentify-rs Public

    Rust port of the Scala lib DicomDeidentify

    UMEssen/dicom-deidentify-rs’s past year of commit activity
    Rust 1 MIT 0 0 2 Updated May 22, 2026
  • DicomDeidentify Public Forked from luckfamousa/DicomDeidentify

    dcm4che based DICOM de-identification lib

    UMEssen/DicomDeidentify’s past year of commit activity
    Scala 4 3 0 0 Updated May 22, 2026
  • RAPID Public
    UMEssen/RAPID’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 13, 2026
  • DeidentiFHIR Public
    UMEssen/DeidentiFHIR’s past year of commit activity
    Scala 10 MIT 2 10 5 Updated May 8, 2026
  • DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    UMEssen/DICOM-RST’s past year of commit activity
    Rust 26 MIT 3 16 (1 issue needs help) 2 Updated May 7, 2026
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