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  1. genome_downloader genome_downloader Public

    A high-performance, general-purpose bacterial genome downloader from NCBI RefSeq and GenBank. Built in Rust for production use in large-scale comparative genomics pipelines.

    Rust 2

  2. important_scientific_templates important_scientific_templates Public

    This repository contains a collection of templates for various documents commonly used in scientific research and publication.

    1

  3. mds_analysis mds_analysis Public

    A step-by-step tutorial for analyzing molecular dynamics (MD) simulations using GROMACS.

    Shell 2

  4. Microbiome_Analysis_DIAMOND_MEGAN_Pipeline Microbiome_Analysis_DIAMOND_MEGAN_Pipeline Public

    An automated Snakemake workflow for comprehensive taxonomic and functional analysis of microbiome sequences. The pipeline utilizes DIAMOND for rapid alignment of short reads or contigs or ORFs and …

  5. cqd_builder cqd_builder Public

    A Python-based molecular modeling tool designed to automate the construction, optimization, and surface functionalization of Carbon Quantum Dot (CQD) nanostructures.

    Python