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Repositories
- cp-posh Public
A Pooled Cell Painting CRISPR Screening Platform Enables de novo Inference of Gene Function by Self-supervised Deep Learning
- ChannelSFormer Public
Code Repository for ChannelSFormer: A Channel Agnostic Vision Transformer for Multi-Channel Cell Painting Images
- AllelicSeries Public
Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutations have increasingly large phenotypic effects.
- MoleculeMiner Public
- kindel Public
KinDEL is a large DNA-encoded library dataset containing two kinase targets (DDR1 and MAPK14) for benchmarking machine learning models.
- contrastive_vi_plus Public
Modeling variable guide efficiency in pooled CRISPR screens with ContrastiveVI+
- causal_considerations_ml_assisted_gwas Public
simulation code for the paper 'Causal considerations can deterimine the utility of machine learning assisted GWAS'
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