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Knight Lab Analyses

Software used for analysis in various Knight Lab projects

38 followers
La Jolla, California
https://knightlab.ucsd.edu

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knight-docs knight-docs Public

General Knight Lab documentation and reference cards

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Showing 10 of 72 repositories

birdman-analyses Public

knightlab-analyses/birdman-analyses's past year of commit activity

Jupyter Notebook 6 BSD-3-Clause 2 0 0 Updated Jun 9, 2026
Acne_Longitudinal_Microbiome Public
GitHub Repository for CMI and L'Oreal's Longitudinal Study of Acne

knightlab-analyses/Acne_Longitudinal_Microbiome's past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Apr 23, 2026
haddad_apoe_fxr_KO_abs_quant Public
The Github Repository for Dr. Gaby Haddad's mouse model experiment using Apoe KO and ApoeFXR KO mice under OSA-like conditions (IHC) using absolute abundance shotgun metagenomics and untargeted metabolomics

knightlab-analyses/haddad_apoe_fxr_KO_abs_quant's past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Mar 21, 2026
KittyBiome_reanalysis Public
reanalysis of the KittyBiome dataset (collaboration with AnimalBiome)

knightlab-analyses/KittyBiome_reanalysis's past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Oct 22, 2025
gates_sepsis_bangladesh Public
Metagenomic Multi-Bodysite Dataset, in collaboration with SickKids, funded by the Gates Foundation

knightlab-analyses/gates_sepsis_bangladesh's past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Sep 16, 2025
OSAstudy_16S_HFHC Public
Analysis of the 16S rRNA (V4) amplicon sequencing data of a mouse model (ApoE-/-) of obstructive sleep apnea on high fat, high cholesterol diet (HFHC) in collaboration with the Haddad Lab (UCSD)

knightlab-analyses/OSAstudy_16S_HFHC's past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Apr 1, 2025
U19_3xtg_5xfad_mouse_models Public
3xtg and 5xfad mouse models of Alzheimer's Disease for the U19 grant

knightlab-analyses/U19_3xtg_5xfad_mouse_models's past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Mar 18, 2025
dynamics Public
Analysis of Multiple Circadian/Longitudinal Datasets

knightlab-analyses/dynamics's past year of commit activity

Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Aug 31, 2024
marmoset-diet-change Public
Shotgun metagenomic analysis of laboratory-house common marmoset breeding colony that switched from pelleted to gel diet

knightlab-analyses/marmoset-diet-change's past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jan 17, 2024
uc-severity-multiomics Public

knightlab-analyses/uc-severity-multiomics's past year of commit activity

Jupyter Notebook 7 BSD-3-Clause 5 3 0 Updated Jul 25, 2023

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