Use SDTM as input - #1318

Draft

Gero1999 wants to merge 34 commits into

mainfrom

Commits on May 18, 2026

temporarily include SDTM datasets as CSV
Gero1999
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e9fc2c8
add scripts to transform SDTM inputs to PKNCA
Gero1999
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5ce633c

Commits on May 20, 2026

Merge pull request #1311 from pharmaverse/1268-enhancement/data-raw-testthat-check
Gero1999
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bb19a05

Commits on May 21, 2026

correct PCELTM derivation so it uses NRRLT instead of NFRLT
Gero1999
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d99ebee
Merge remote-tracking branch 'origin/main' into sdtm-input
Gero1999
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9ad6724

Commits on May 22, 2026

Commits on May 26, 2026

Fix SDTM mapping panel: visibility, duplicate IDs, selectize population

Gero1999
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ona-agent
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ecbf3db
Fix SDTM submit freeze, add SDTM General mapping section, add logging

Gero1999
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f4ab0f2
Fix vector coercion error in SDTM column rename

Gero1999
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54e8e58
Add TRT01A alias for DOSETRT in SDTM conc data

Gero1999
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4ec5bd0
add to-do message
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f6b9296
Load SDTM example data by default when no files uploaded

Gero1999
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d6741b4
Apply column mapping in SDTM script template

Gero1999
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0312293

Commits on May 27, 2026

Fix 9 test failures: RRLTU casing and tapply array class

Gero1999
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b92f8b8
update man (roxygenise)
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509856b
run rebuild.R
Gero1999
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a22e698
Merge branch 'sdtm-input' of https://github.com/pharmaverse/aNCA into sdtm-input
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edd804d
Fix lint issues: naming, indentation, cyclomatic complexity

Gero1999
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3f5eee1
fix lintr issues
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877f99b
update WORDLIST
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394fb2f
lint: simplify helper fun name
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65fbd19
lintr: identation
Gero1999
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49d8bb4

Commits on Jun 2, 2026

Handle empty EXDUR/EXELTM/PCELTM and extend ISO 8601 duration parser

Gero1999
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834fd50
Warn when dose duration defaults to 0

Gero1999
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930b1f1
fix warning msg for EXDUR=0 assumed
Gero1999
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c0474f6
Map PCSTAT/PCREASND to nca_exclude for SDTM exclusions

Gero1999
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ona-agent
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4c55739
Add PCREASND as mappable exclusion column for SDTM

Gero1999
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7b9e5ee
Filter excluded samples with missing time (PKNCA workaround)

Gero1999
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68b6a8b